The Birmingham Area Linux Usersdata to process:
- vert and horiz meridians on surface blanks vs saccades wed sep 21st on surface ssparse velocity data
brak hi anat -> surface
data to collect:
- faces vs. scrambled kiwi oblique meridians brak meridians retinotopy?
T1map2 parameters whole brain
- tr 2500 te 650 matrix 128^2 FOV 128^2 orient ax ro off 0 sl 26 gap 0 thk 2 sl off -3 pow 53 gain 40 linear = dark superior rev = dark inferior
- kiwi retinotopy
- 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 0 0 0 1 1 1 1 1 1 24sec 4min
kiwi func
for f in 05 06 07 08 09 10 11 ; do to3d -session ../analysis -prefix epidw_$f -time:tz 60 26 4sec zero -xFOV 64L-R -yFOV 64A-P -zFOV 43S-9I 3Df:-1:0:64:64:1:epidw_$f.img/*.fdf ; done sl off = -17mm rm *short* ; for f in 05 06 07 08 09 10 11 ; do 3dcalc -prefix epidw_${f}_short -nscale -datum short -a epidw_$f+orig -expr 'a/5.7e-6' ; 3dinfo epidw_${f}_short+orig. ; done 05 MT MST localizer 06 blank vs saccades 07 MT MST localizer 08 blank vs saccades 09 MT MST localizer 10 blank vs saccades 11 MT MST localizer
brak anat
for f in 01 02 03 04 05 06 07 08 09 10 11 12 ; do to3d -session ../analysis -prefix brakanat${f} -xFOV 64L-R -yFOV 64A-P -zFOV 29S-23I 3Df:-1:0:128:128:1:T1map2_${f}.img/*.fdf ; done 3dcalc -a brakanat01+orig -b brakanat02+orig -c brakanat03+orig -d brakanat04+orig -e brakanat05+orig -f brakanat06+orig -g brakanat07+orig -h brakanat08+orig -i brakanat09+orig -j brakanat10+orig -k brakanat11+orig -l brakanat12+orig -expr 'mean(a,b,c,d,e,f,g,h,i,j,k,l)' -prefix brakanatmean 3dcalc -a brakanat01+orig -b brakanat02+orig -c brakanat03+orig -d brakanat04+orig -e brakanat05+orig -f brakanat06+orig -g brakanat07+orig -h brakanat08+orig -i brakanat09+orig -j brakanat10+orig -k brakanat11+orig -l brakanat12+orig -expr 'median(a,b,c,d,e,f,g,h,i,j,k,l)' -prefix brakanatmedian 3dcalc -a brakanat01+orig -b brakanat02+orig -c brakanat03+orig -d brakanat04+orig -e brakanat05+orig -f brakanat06+orig -g brakanat07+orig -h brakanat08+orig -i brakanat09+orig -j brakanat10+orig -k brakanat11+orig -l brakanat12+orig -expr 'mad(a,b,c,d,e,f,g,h,i,j,k,l)' -prefix brakanatmad 3dcalc -prefix brakshort2 -a brakanatmean+orig. -expr 'a/2.28898e-06' -datum short -nscale tr 2500 te 650 matrix 128^2 FOV 128^2 orient ax ro off 0 sl 26 gap 0 thk 2 sl off -3 pow 53 gain 40
buddy anat
to3d -session ../analysis -prefix TI800sems -xFOV 64L-R -yFOV 64A-P -zFOV 43S-13I 3Df:-1:0:128:128:1:*.fdf rm TI800sems_short+orig.* ; 3dcalc -prefix TI800sems_short -nscale -datum short -a TI800sems+orig -expr 'a/6e-6' ; 3dinfo TI800sems_short+orig.
ver123 analysis
- 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 1 1 1 1 1 0 0 0 0 0 1 1 1 1 1 20sec 4min rm ver123short* ; 3dcalc -prefix ver123short -nscale -datum short -a ver123avg+orig -expr 'a/7e-6'